Connectome Workbench CIFTI Separate¶
Library: Connectome Workbench | Docker Image: khanlab/connectome-workbench
Function¶
Extracts surface or volume components from a CIFTI file into separate GIFTI metric or NIfTI volume files.
Modality: CIFTI dense file (.dscalar.nii, .dtseries.nii, etc.).
Typical Use: Extracting surface or volume data from CIFTI files for further processing.
Key Parameters¶
Key Points¶
Opposite of cifti-create operations. Useful for extracting data for tools that do not support CIFTI format.
Inputs¶
| Name | Type | Required | Label | Flag |
|---|---|---|---|---|
cifti_in |
File |
Yes | Input CIFTI file to separate | |
direction |
enum |
Yes | Separation direction (ROW or COLUMN) | |
volume_all |
string |
No | Output volume file for all volume structures | -volume-all |
volume_all_crop |
boolean |
No | Crop volume to data size | -crop |
metric_left |
string |
No | Output metric file for left cortex | |
metric_right |
string |
No | Output metric file for right cortex |
Accepted Input Extensions¶
- cifti_in:
.dtseries.nii,.dscalar.nii,.dlabel.nii,.dconn.nii
Outputs¶
| Name | Type | Glob Pattern |
|---|---|---|
volume_output |
File |
$(inputs.volume_all) |
left_metric_output |
File |
$(inputs.metric_left) |
right_metric_output |
File |
$(inputs.metric_right) |
log |
File |
wb_cifti_separate.log |
err_log |
File |
wb_cifti_separate.err.log |
Output Extensions¶
- volume_output:
.nii,.nii.gz - left_metric_output:
.func.gii - right_metric_output:
.func.gii
Docker Tags¶
Available versions: latest
Categories¶
- Functional MRI > Connectome Workbench > CIFTI Operations