TBSS Step 2: Registration¶
Library: FSL | Docker Image: brainlife/fsl
Function¶
Registers all FA images to a target (best subject or standard-space template) using non-linear registration.
Modality: Preprocessed FA images from tbss_1_preproc.
Typical Use: Second step of TBSS pipeline: aligning all subjects to common space.
Key Parameters¶
-T (use FMRIB58_FA as target), -t
Key Points¶
Use -T for standard target (recommended for most analyses). -n finds best representative subject but takes longer. Registration quality should be checked visually.
Inputs¶
| Name | Type | Required | Label | Flag |
|---|---|---|---|---|
fa_directory |
Directory |
Yes | FA directory from tbss_1_preproc | |
use_fmrib_target |
boolean |
No | Use FMRIB58_FA standard-space image as target | -T |
target_image |
File |
No | Use specified image as target | -t |
find_best_target |
boolean |
No | Find best target from all subjects | -n |
Accepted Input Extensions¶
- target_image:
.nii,.nii.gz
Outputs¶
| Name | Type | Glob Pattern |
|---|---|---|
FA_directory |
Directory |
FA |
log |
File |
tbss_2_reg.log |
Docker Tags¶
Available versions: latest, 6.0.4-patched2, 6.0.4-patched, 6.0.4, 6.0.4-xenial, 5.0.11, 6.0.0, 6.0.1, 5.0.9
Categories¶
- Diffusion MRI > FSL > TBSS