niBuild includes 155+ neuroimaging tools from 11 software libraries, organized by imaging modality. Browse the categories below to find tools for your analysis pipeline.
Modalities
| Modality |
Description |
| Structural MRI |
T1/T2-weighted imaging for brain anatomy. Skull-stripping, tissue segmentation, cortical reconstruction, and spatial registration. |
| Functional MRI |
Task-based and resting-state fMRI. Motion correction, slice timing, smoothing, temporal filtering, GLM, and ICA. |
| Diffusion MRI |
DWI/DTI processing. Tensor fitting, tractography, fiber orientation estimation, and connectivity analysis. |
| Arterial Spin Labeling |
Non-invasive perfusion imaging. Cerebral blood flow quantification and partial volume correction. |
| PET |
Positron Emission Tomography. Kinetic modeling, partial volume correction, and tracer quantification. |
| Multimodal |
Cross-modality analysis pipelines integrating structural, functional, and diffusion data. |
| Utilities |
General-purpose tools for format conversion, image math, resampling, and quality control. |
| Pipelines |
Complete multi-step analysis pipelines that chain several operations as a single command. |
Libraries
| Library |
Tools |
Docker Image |
| FSL |
51 |
brainlife/fsl |
| AFNI |
47 |
brainlife/afni |
| FreeSurfer |
22 |
freesurfer/freesurfer |
| ANTs |
17 |
antsx/ants |
| MRtrix3 |
8 |
mrtrix3/mrtrix3 |
| Connectome Workbench |
5 |
khanlab/connectome-workbench |
| fMRIPrep |
1 |
nipreps/fmriprep |
| MRIQC |
1 |
nipreps/mriqc |
| AMICO |
1 |
cookpa/amico-noddi |
| dcm2niix |
1 |
xnat/dcm2niix |
| ICA-AROMA |
1 |
rtrhd/ica-aroma |